TUTORIALS

A selected collection of tutorials I have created for data analysis, machine learning, and data visualisation.

CALIBRAIN LIBRARY

Simulating a Lead Field with MNE-Python

CaliBrain Library

This tutorial walks through the process of setting up a forward model and simulating a lead field matrix using the MNE-Python library, a foundational step for source estimation tasks in CaliBrain.

MNE-Python Source Estimation Forward Model Python CaliBrain

Simulating Multi-Trial ERP-like Brain Source Signals

CaliBrain Library

Learn how to generate realistic, multi-trial brain source signals with event-related potential (ERP) characteristics. This is crucial for testing the performance of source reconstruction algorithms in a controlled environment.

ERP Signal Simulation CaliBrain Python Neuroscience

Computing Inverse Methods and Reconstructing Brain Sources

CaliBrain Library

This guide covers the application of various inverse methods available in CaliBrain to reconstruct brain source activity from simulated M/EEG data. Compare different algorithms and understand their outputs.

Inverse Methods Source Reconstruction M/EEG CaliBrain Python

Plotting Credible Intervals and Calibration Curves

CaliBrain Library

A key feature of CaliBrain is uncertainty quantification. This tutorial demonstrates how to visualize the uncertainty of source estimates by plotting credible intervals and assess model calibration with calibration curves.

Uncertainty Quantification Data Visualization Calibration CaliBrain Python

MNE-CONNECTIVITY

Comparison of coherency-based methods

MNE-Python Toolbox

This example demonstrates the distinct forms of information captured by coherency-based connectivity methods, and highlights the scenarios in which these different methods should be applied.

MNE-Python Connectivity Coherency Signal Processing Python

Compute multivariate coherency/coherence

MNE-Python Toolbox

This example demonstrates how canonical coherency (CaCoh) - a multivariate method based on coherency - can be used to compute connectivity between whole sets of sensors, alongside spatial patterns of the connectivity.

MNE-Python Connectivity Multivariate Analysis CaCoh Python